There aren't really any through 2061 because it didn't become an overt thing to engage in until SR3. But the gist is:
Universal Brotherhood
Bug City (1995-97)
Aztlan (1995-96)
Super Tuesday! (1995-96: Election 2057)
Threats
Portfolio of a Dragon (1997- : Death of a Dragon fallout)
Mob War! (1997: Seattle mob war)
Blood in the Boardroom (1997-98: corp war)
Renraku Arcology: Shutdown (1997-2001: shutdown)
Year of the Comet (2001: return of Halley's Comet in 2061. Probe Race, SURGE, Ghostwalker, all sorts of shit. The first real metaplot book)
Threats 2
Shockwaves (PDF) (Summary of a major plot across multiple German-language-only books)
System Failure (2005: second real metaplot book. End of SR3/beginning SR4. Crash 2.0)