You need quite high armor penetration values to first reduce the normal armor to zero - and then some.
Until you do the armor bonus from Bone Lacing will not really be reduced by armor penetration.
- I'd say that is basically only an issue if you are nekkid.
A feature that comes with higher armor value is that attacks that normally deal physical damage now might deal stun instead (which often, but not always, is a bonus).
Having said that, the two augmentations are rather comparable.
...and if you want +3 armor, get a used cyber-foot
