To reference SR4a 332: The GM decides when you need a kit, a shop or a facility and thus whether or not to apply the inadequate/unavailable tools penalty (SR4a 138). The other way around, if you use a Facility to do a Kit mod, you get a bonus from superior tools.
However, the GM might rule that the specific tools needed for this mod aren't Available and then they can decide it's a -4 or not allowed.