I believe the question is about that magician being for free since positive qualities total to 50
anyway the total from what you listed sums to 666 karma, chummer doesn't qualify magician as free it seems
once you sum those values you get -16 available karma, why/how it qualify it as free in your chummer is beyond me.
Still I know that magician is free for spirit.
so it seems you are just a single point of karma above the limit